Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906190.1_cds_XP_016456384.1_50223
CDS Infomation

[gene=LOC107780375] [db_xref=GeneID:107780375] [protein=probable galacturonosyltransferase 12] [protein_id=XP_016456384.1] [location=join(9357..9579,9750..9805,9957..10112,10573..11163,11269..11571,11871..12155)] [gbkey=CDS]
Sequence

ATGAAACAAACAATGCAGCTCCTCATATCACCAAGTCTAAGGCATGTTACTGTCCTACCA
GCTAAAGGTTTCAAGGAGTTCATCAAAATAAAAGTTGGTTCCAGACGATTATCGTATCTC
ATGGTCTTCTATTCACTCCTGCTTTTTACATTTCTTCTTCGGTTTGTCTTCGTTTTAACA
GCTGTAGACACCATCGATGGAGAACTAAAATGTTCAACACTAGGTTGCTTGGGGAGAAAA
ATTGGACCAAGGATTTTGGGAAGACAGCTCGAATCAACTGTTCCAGAGGTGATATACCAA
GTATTGGAGGAACCTTCAGACCAGATTGAAATGGAAGCAGGTCCCGAAACTCCTCAAACA
TTAGAAGAGTTTATGGCAGAAATGAAGGACACAAAGCCAGATGCAGAAACCTTTGCTGTC
AAGCTTAAAGCTATGGTAACTCTCCTTGAACAAACAACAAGAACTGCCAAAATTCAAGAG
TACCTTTATCGGCATGTGGCATCTAGTGGCATCCCGAAACAGCTGCACTGTCTTGATCTC
AAGCTAGCGCACGAGCATTCTATCAACGCCAATGCCCGTCTCCAATTACCATCAGCGGAA
CTTGTTCCTGCCCTAGTTGATAATTCATATTTCCATTTTGTCCTTGCCTCTGACAATATT
CTTGCTGCTTCTGTTGTTGCATCATCGCTCGTCCAGAATTCTTTCCGCCCTGCAAAAGTT
GTCCTTCACATAATCACAGATAGCAAAACCTTCTCGCCGATGCAAGCTTGGTTTTCATTA
CATCCTTTGACACCTGCAATCATCGAGGTTAAAGCGTTGCACCATTTTGATTGGTTAACA
AAGGGAAAGGTCCCAGTTCTGGAAGCAATGGAAAAAGACCAAAAAGCAAGATCACAATTC
AGGGGAGGATCATCAGCAATCGTAGCAAATACAACCGAAAAGCCTCATATCATTGCAGCA
AAGTTGCAAGCCCTCAGTCCCAAATACAATTCCCTAATGAACCACATAAGGATATATTTG
CCAGAATTGTTTCCCAGTCTTGATAAGGTAGTCTTCCTGGATGACGACGTCGTTGTTCAA
ACTGATCTTTCATCTCTATGGGACATTGACATGAATGGAAAGGTGAATGGAGCAGTGGAG
ACATGTAGAGGAGAGGACAAATTTGTGATGTCAAAGCGCTTCAAAAGCTATTTGAATTTT
TCTCATCCTATGATATCAAACAACTTTGATCCGAATGAATGCGCATGGGCTTATGGCATG
AATATTTTTGATCTAGAAGCATGGAGAGAAACAAATATAAGTCAAGCATACCAATATTGG
CTTGAACAGAACTTGAAGTCAGACCTAAGTTTGTGGCAGCTAGGAACATTACCTCCAGGT
CTAATTGCATTTCATGGTCATGTCCATGCCATTGAATCCTTCTGGCACATGCTAGGACTC
GGGTACCAAGATAATACGAGCATCGCGGATGCTCAAAGTGCTGGTGTGATCCACTTCAAC
GGTCGAGCAAAACCTTGGCTAGATATATCATTCCCTCAACTTCGACCCTTGTGGACAAAG
TATGTCAACTTCTCTGATAAATTTATCAATAGCTGTCATATTAGAGAAACTTGA

Peptide Sequence

PEP ID

XP_016456384.1
PEP Infomation

PREDICTED: probable galacturonosyltransferase 12 [Nicotiana tabacum]
Sequence

MKQTMQLLISPSLRHVTVLPAKGFKEFIKIKVGSRRLSYLMVFYSLLLFTFLLRFVFVLT
AVDTIDGELKCSTLGCLGRKIGPRILGRQLESTVPEVIYQVLEEPSDQIEMEAGPETPQT
LEEFMAEMKDTKPDAETFAVKLKAMVTLLEQTTRTAKIQEYLYRHVASSGIPKQLHCLDL
KLAHEHSINANARLQLPSAELVPALVDNSYFHFVLASDNILAASVVASSLVQNSFRPAKV
VLHIITDSKTFSPMQAWFSLHPLTPAIIEVKALHHFDWLTKGKVPVLEAMEKDQKARSQF
RGGSSAIVANTTEKPHIIAAKLQALSPKYNSLMNHIRIYLPELFPSLDKVVFLDDDVVVQ
TDLSSLWDIDMNGKVNGAVETCRGEDKFVMSKRFKSYLNFSHPMISNNFDPNECAWAYGM
NIFDLEAWRETNISQAYQYWLEQNLKSDLSLWQLGTLPPGLIAFHGHVHAIESFWHMLGL
GYQDNTSIADAQSAGVIHFNGRAKPWLDISFPQLRPLWTKYVNFSDKFINSCHIRET

Transcript Sequence

Gene sequence data has not been registered.